Agricultural filtration would be placed downstream of a pump feeding the emitters. They have units that can automatically switch between filters and backwash clogged screens. They cost serious money, but they are intended for a serious application.
As the spring as a water source, is it beneath the surface of the pond? Taking the pond out of the supply chain would simplify things as far as cleanliness goes. For a pond as water source, you have to screen the inlet. You can buy simple
inlet strainers made from pipe with slots cut in it and screening applied.